Description of Individual Course Units
Course Unit CodeCourse Unit TitleType of Course UnitYear of StudySemesterNumber of ECTS Credits
200100106103GIDA BİYOTEKNOLOJİSİCompulsory363
Level of Course Unit
First Cycle
Objectives of the Course
The aim of the course is to inform the students about the concepts of biotechnology and fermentation, which are accepted as the science of the millennium, on the basis of wide application areas. In this context, the main aim is to teach students the wide application areas of biotechnology, especially in food, the principles of microbial nutrition, the basic stages of biotechnological processes, and fermentation systems. To inform about the downstream process step options of the obtained raw product and to teach to reach the result by applying change management when necessary. To introduce biological treatment methods from waste material processing processes. In addition, it is to give information about the applications of some anaerobic (ethyl alcohol production, lactic acid production, etc.) and aerobic (baker's yeast and citric acid production) biotechnological processes on an industrial scale.
Name of Lecturer(s)
Dr. Öğr. Üyesi Mehmet Selim ŞILBIR
Learning Outcomes
1To understand the terms of biotechnology and fermentation and to learn their importance in food engineering.
2To learn the basic steps of a biotechnological process.
3To have knowledge about why microorganisms produce products and microbial metabolism.
4To acquire basic information about the structure of DNA and recombinant DNA technology.
5To have knowledge about the applications of some anaerobic (ethyl alcohol production, lactic acid production etc.) and aerobic (baker's yeast and citric acid production) biotechnological processes in industrial scale.
Mode of Delivery
Daytime Class
Prerequisites and co-requisities
none
Recommended Optional Programme Components
Course Contents
Definitions of related terms in biotechnology and fermentation topics. Basic application areas of biotechnology. Comparison of biotechnological processes and chemical processes. Principles of microbial nutrition. Microbial metabolism, basic metabolic pathways, aerobic and anaerobic respiration, fermentation, oxidative phosphorylation. Structure of DNA, recombinant DNA technology and applications, polymerase chain reaction. Basic stages of biotechnological processes. Bioreactors used in biotechnological processes. Batch, continuous and semi-continuous, and batch-fed fermentation systems. Downstream processing steps of the product. Biological treatment (aerobic and anaerobic) methods from waste material treatment processes. Applications of some anaerobic (ethyl alcohol production, lactic acid production, etc.) and aerobic (baker's yeast and citric acid production) biotechnological processes on an industrial scale.
Weekly Detailed Course Contents
WeekTheoreticalPracticeLaboratory
1Definition of fermentation and biotechnology. History of biotechnology. Basic application areas of biotechnology. Fundamental differences between biotechnological and chemical processes. Basic units in a biotechnological production facility.Introduction of laboratories
2Microbial metabolism and basic pathways in metabolism. Glycolysis, Krebs cycle, oxidative phosphorylation, aerobic respiration, anaerobic respiration, fermentation, lactic acid fermentation, ethyl alcohol fermentation.Pickle productionPickle production
3Structure of DNA, recombinant DNA technology and applications, polymerase chain reaction.The analyzes in picklesThe analyzes in pickles
4Reproduction stages of microorganisms. Prerequisites for microorganisms to reproduce and form products in the fermentation medium. Principles of microbial nutrition.Utilization of molasses as a fermentation medium and pretreatments applied to molasses
5Basic steps of biotechnological processes, downstream and upstream processes. Industrial fermentation medium formulation and preparation. Synthetic media and complex media. Some nitrogen and carbon sources used in the fermentation industry.Production of citric acid using Aspergillus nigerProduction of citric acid using Aspergillus niger
6Characteristics of industrial microorganisms, culture collections, inoculation of the microorganism under aseptic conditions and initiation of fermentation.Acidity, pH determinations and interpretation of acidity increase in fermentation samples
7Aeration problem in aerobic processes, oxygen transfer coefficient, the effect of aeration efficiency on biotechnological processes. Bioreactors and bioreactor types. Bioreactor design.Levansucrase enzyme production in a bioreactor
8Mid-term ExamMid-term Exam
9Fermentation systems, batch system, semi-continuous system, continuous system, batch fed system.Settling experiment
10Production of fermented beverages and basic equipment used in production.Determination of sugaring time in maltDetermination of sugaring time in malt
11Introduction to downstream processes in bioprocesses (properties of biological products). Pretreatments a) heating/cooling; b) sedimentation; c) foam formation (foam separation; foam flotation); flocculation and coagulation; precipitation. Cell lysis methods: a) mechanical lysis - breaking forces in solid state, breaking forces in solution; b) non-mechanical fractionation - physical methods (osmotic shock, freezing and thawing, pressure reduction); - chemical methods; -enzymatic methods; - drying (lyophilisation, solvent drying, air drying).Determination of density, alcohol, and real extract in beer by pycnometer
12Solid – liquid separation processes: a) filtration; b) microfiltration; c) centrifugation; d) centrifugal filtration; Concentration processes: extraction; membrane separation methods (ultrafiltration, reverse osmosis, electrodialysis). Purification processes: a) chromatography (adsorption chromatography, ion exchange chromatography, gel filtration, affinity chromatography, hydrophobic chromatography, dispersion chromatography; b) electrophoresis. Finishing of the product: drying; formulation.General and free SO2 determination and ebuliometric alcohol determination in wineGeneral and free SO2 determination and ebuliometric alcohol determination in wine
13Introduction to waste material treatment processes: definitions (BOD; COD). Methods: a) physical methods; b) chemical methods; c) biological methods. Mixed culture use. Different types of bioreactors that should not undergo aerobic fermentation and are used. Anaerobic fermentation applications. Water purification systems. Evaluation of by-products – obtaining single cell protein, ethyl alcohol, organic acids, phenolic acids, aromatic compounds.Determination of volatile acid in wineDetermination of volatile acid in wine
14Applications of some anaerobic biotechnological processes in industrial scale. Ethyl alcohol production: substrate selection, microorganism options, fermentation patterns, bioreactor types used, downstream processes, by-products, problems and solution methods. Lactic acid production: substrate selection, properties of lactic acid bacteria, metabolic pathways- homofermetative and heterofermentative pathways, mass transfer, bioreactor types used, production problems and solution methods.Determination of acetyl methyl carbinol in vinegarDetermination of acetyl methyl carbinol in vinegar
15Some aerobic biotechnological processes on an industrial scale. Production of baker's yeast from aerobic bioprocesses: media options (molasses), characteristics of S. cerevisiae, fermentation type, bioreactor types and properties used, downstream processes (drying), problems and solution methods. Production of citric acid: media selection and pretreatments, properties of A.niger, fermentation type, bioreactor types used, purification, by-products, problems and solution methods.General evaluationGeneral evaluation
16Final ExamLab ExamLab Exam
Recommended or Required Reading
1. Waites, M.J., Morgan, N.L., Rockey, J.S., Higton, G. 2001. Industrial Microbiology: An Introduction, Blackwell Science Ltd., 288 pp. 2. Demain, A. L., Solomon, N.A. (eds.). 1986. Manual of Industrial Microbiology and Biotechnology, American Society for Microbiology, Washington D.C., 466 pp. 3.Göksungur, Y, 2009, Reaction and Fermentation Kinetics in Food Engineering, Sidas Medya Ltd. Şti., İzmir, 143 sayfa 4. Glazer, A. N., Nikaido, H., 1995, Microbial Biotechnology, W.H. Freeman and Company, New York,. 5. Pirt, S.J., 1985, Principles of Microbe and Cell Cultivation, Blackwell Scientific Publications, Oxford. 6. Doran, P.M.,1995. “Bioprocess Engineering Principles” , Elsevier Science and Technology Books, Sydney. YARDIMCI KİTAPLAR: 1. Bisswanger, H., 2002, Enzyme Kinetics, Principles and Methods, Wiley-VCH Verlag GmbH, Weinheim, 255 pp. 2.Stanbury, P.F., Whitaker, A., Hall, S.J., 1995, Principles of Fermentation Technology, Elsevier Science Ltd, Oxford, 357 pp. 3.Geankoplis,C.J.,2003.“Transport Processes and Separation Process Principles”, Pearson Education Ins., New Jersey. 4.Verrall, M.,1996. “Downstream Processing of Natural Products”, Wiley. 5.Telefoncu , A.,1995. “Biyoteknoloji”, Ege Üniversitesi Fen Fakültesi Yayınları,No.152 6.Hutkins, R.W.,2006.”Microbiology and Technology of Fermented Foods”,Blackwel Publishing, Iowa.
Planned Learning Activities and Teaching Methods
Assessment Methods and Criteria
Term (or Year) Learning ActivitiesQuantityWeight
Midterm Examination1100
SUM100
End Of Term (or Year) Learning ActivitiesQuantityWeight
Final Examination1100
SUM100
Term (or Year) Learning Activities40
End Of Term (or Year) Learning Activities60
SUM100
Language of Instruction
Work Placement(s)
none
Workload Calculation
ActivitiesNumberTime (hours)Total Work Load (hours)
Midterm Examination122
Self Study14456
Individual Study for Mid term Examination14228
TOTAL WORKLOAD (hours)86
Contribution of Learning Outcomes to Programme Outcomes
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* Contribution Level : 1 Very low 2 Low 3 Medium 4 High 5 Very High
 
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