Course Unit Code | Course Unit Title | Type of Course Unit | Year of Study | Semester | Number of ECTS Credits | TBİ-23-128 | BIoInformatIcs and Its applIcatIons | Elective | 1 | 3 | 6 |
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Level of Course Unit |
Second Cycle |
Objectives of the Course |
The aim of this course is to introduce basic bioinformatics applications to the MSc students. |
Name of Lecturer(s) |
Dr. Öğr. Üyesi Kaan Hürkan |
Learning Outcomes |
1 | 1) Basic terminology about bioinformatics | 2 | 2) Using Gene Banks | 3 | 3) Computer software types for bioinformatics | 4 | 4) Internet sites for bioinformatics | 5 | 5) Basic bioinformatics analysis |
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Mode of Delivery |
Daytime Class |
Prerequisites and co-requisities |
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Recommended Optional Programme Components |
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Course Contents |
Basic terminology about bioinformatics, Using Gene Banks, Computer software types for bioinformatics, Internet sites for bioinformatics, Basic bioinformatics analysis |
Weekly Detailed Course Contents |
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1 | Getting Started in Bioinformatics: Analysing DNA Sequences, Analysing RNA Sequences | | | 2 | DNA Coding Regions, Working With Entire Genomes | | | 3 | How to Use Bioinformatics | | | 4 | Using Nucleotide Sequence Databases | | | 5 | Using Protein and Specialised Sequence Databases | | | 6 | Working With a Single DNA Sequence | | | 7 | Tek Protein Dizisi İle Çalışma | | | 8 | Advanced Techniques on Analysing DNA Sequences | | | 9 | Comparing Two Sequences | | | 10 | Multiple Alignment of Sequences | | | 11 | Editing and Publishing Alignments | | | 12 | Advanced Techniques on Bioinformatics | | | 13 | Building Phylogenetic Trees | | | 14 | Introducing Some Bioinformatics Resources | | |
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Recommended or Required Reading |
Kaya, Z., 2014. Bioinformatics for Biologists / Pevzner, P., Shamir, R., 2011. Biyologlar İçin Biyoenformatik. 1. Basımdan Çeviri. Kızılay: Nobel Akademik Yayıncılık. ISBN: 9786051337791
Claverie, J. M. ve Notredame, C., 2007. Bioinformatics for Dummies 2nd Edition. Hoboken: Wiley Publishing Inc. ISBN: 9780470089859 |
Planned Learning Activities and Teaching Methods |
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Assessment Methods and Criteria | |
Midterm Examination | 1 | 100 | SUM | 100 | |
Report | 1 | 100 | SUM | 100 | Term (or Year) Learning Activities | 40 | End Of Term (or Year) Learning Activities | 60 | SUM | 100 |
| Language of Instruction | Turkish | Work Placement(s) | |
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Workload Calculation |
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Midterm Examination | 1 | 1 | 1 |
Final Examination | 1 | 2 | 2 |
Self Study | 14 | 8 | 112 |
Individual Study for Mid term Examination | 1 | 20 | 20 |
Individual Study for Final Examination | 1 | 20 | 20 |
Homework | 1 | 10 | 10 |
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Contribution of Learning Outcomes to Programme Outcomes |
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* Contribution Level : 1 Very low 2 Low 3 Medium 4 High 5 Very High |
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Iğdır University, Iğdır / TURKEY • Tel (pbx): +90 476
226 13 14 • e-mail: info@igdir.edu.tr
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